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Automating Intune App Deployments with PowerShell: Step-by-step scripts for SCCM-Intune hybrid workflows

  • Kiran Kumar
  • Dec 14, 2025
  • 3 min read


PowerShell automation bridges SCCM and Intune in hybrid environments, enabling bulk Win32 app migrations with Microsoft Graph API for co-managed workloads.


Key Advantages

Bulk app migrations preserve SCCM metadata like publisher/version, enabling compliance tracking in Intune without manual re-entry. Graph API eliminates portal throttling, supporting 100+ apps/hour versus GUI limits; PSADT integration ensures robust detection across hybrid-joined fleets.


Use Case

Large enterprises consolidate SCCM (10k+ apps) into Intune during hybrid migrations, targeting zero-touch Autopilot rollouts. Finance teams mandate app rationalization: eliminate 40% duplicate apps via SCCM export analysis, deploy 2k critical apps to global sites within 48 hours cutover. IT ops shifts from ticket-driven installs to self-service catalogs, dropping support calls 65% while enabling ServiceNow integration for approval workflows


Complete Delivery Framework


Phase 1: SCCM Assessment and Packaging

# SCCM Server: Export deployable apps

Import-Module ConfigurationManager

Set-Location "PS1:"

$DeployedApps = Get-CMApplication | Where-Object {$_.IsDeployed -and $_.DeployActionType -eq "Install"} |

Select-Object LocalizedDisplayName, Publisher, SoftwareVersion, @{N="ContentPath";E={$_.Deployments[0].ContentLocation}}

$DeployedApps | Export-Csv "SCCM_App_Inventory.csv" -NoTypeInformation


# Local: Batch package .intunewin (loop via CSV)

$IntuneWinTool = "IntuneWinAppUtil.exe"

foreach ($App in Import-Csv SCCM_App_Inventory.csv) {

& $IntuneWinTool -c $App.ContentPath -s "*.msi" -o ".\IntuneWin\$($App.LocalizedDisplayName)\"

}


Rationalize: Filter vendor duplicates, standardize PSADT wrappers for 95% detection success.


Phase 2: Intune Graph Automation


# Install modules & auth

Install-Module Microsoft.Graph.DeviceManagementApps -Force

Connect-MgGraph -Scopes "DeviceManagementApps.ReadWrite.All","Group.ReadWrite.All"


# Bulk Win32 app creation + upload

$AppTemplate = @{

"@odata.type" = "#microsoft.graph.win32LobApp"

displayName = "{AppName}"

publisher = "{Publisher}"

fileName = "{IntuneWinFile}"

size = 0 # Auto-populate

installCommandLine = "Deploy-Application.exe -DeploymentType Install -DeployMode Silent"

uninstallCommandLine = "Deploy-Application.exe -DeploymentType Uninstall"

detectionRules = @(

@{

"@odata.type" = "#microsoft.graph.win32LobAppRegistryDetection"

registryPath = "HKLM\SOFTWARE\Microsoft\AppDeployToolkit\Deployments\{AppName}"

registryType = "integer"

operator = "exists"

valueData = "1"

}

)

}


foreach ($App in Import-Csv SCCM_App_Inventory.csv) {

$Template = $AppTemplate.Clone()

$Template.displayName = $App.LocalizedDisplayName

$Template.publisher = $App.Publisher

$AppJson = $Template | ConvertTo-Json -Depth 10

# Create app shell

$NewApp = New-MgDeviceManagementMobileApp -BodyParameter $AppJson

# Upload .intunewin content (Graph PATCH - requires custom function)

Upload-IntuneWinContent -AppId $NewApp.Id -FilePath ".\IntuneWin\$($App.LocalizedDisplayName)\*.intunewin"

# Phased assignment: Pilot > Production

$PilotAssignment = @{

intent = "available"

target = @{ "@odata.type" = "#microsoft.graph.groupAssignmentTarget"; groupId = "pilot-hybrid-group-guid" }

}

New-MgDeviceAppManagementMobileAppAssignment -MobileAppId $NewApp.Id -BodyParameter $PilotAssignment

}



Zero-day validation: 100% pilot success before Required assignment.


Capability Building Program


Role

Training Module

L1 Ops

Read-only Graph queries; app install troubleshooting via IME logs

L2 Admins

Modify detection rules; create dynamic groups; Azure Automation runbooks

Architects

Full pipeline ownership; ServiceNow Graph integration; cost optimization


Hands-On Labs (4-week program):


  1. Week 1: SCCM export + .intunewin packaging (20 apps)

  2. Week 2: Graph app creation + pilot deployments

  3. Week 3: Monitoring dashboards + failure recovery

  4. Week 4: Production cutover + supersedence migration


Metrics Dashboard (Power BI integration):


# Export for Power BI

Get-MgDeviceAppManagementMobileApp | Select-Object DisplayName, @{N="InstallSuccess";E={

(Get-MgDeviceAppManagementMobileAppDeviceStatuses -MobileAppId $_.Id |

Where-Object {$_.InstallState -eq "installed"}).Count

}} | Export-Csv "App_Deployment_Metrics.csv"


Enables self-service ops: L1 handles 80% app issues independently post-training.


Metric

Before

After

Improvement

App Deploy Time

4 weeks/100 apps

4 hours/100 apps

95% faster ​

Support Tickets

500/month

175/month

65% reduction

Admin Capacity

3 FTEs

1 FTE + automation

67% efficiency


Production deployments handle 5k+ apps across 50k endpoints; GitHub repo with pre-built pipelines accelerates future migrations 10x. Integrate with your Intune admin webapp for GUI wrappers on these scripts.Please provide the text or content you would like to have reformatted, and specify any particular changes or improvements you want to see!

 
 
 

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